Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858696.1_cds_XP_016514039.1_26531
CDS Infomation

[gene=LOC107830878] [db_xref=GeneID:107830878] [protein=probable Ufm1-specific protease isoform X3] [protein_id=XP_016514039.1] [location=complement(join(69555..69636,69793..69881,70218..70294,70379..70426,70515..70634,70725..70815,72426..72601,72739..72826,72989..73233,74992..75354,75447..75636))] [gbkey=CDS]
Sequence

ATGGTTAGCGAAACCCAAGACCCGACTATTCGGATCCTCTGCCGGAGGCTCCAGATTATC
AAGAATGAATCGGGTCTTCAATGGCTCATCGGCTCTCCATTCTTCCCTCGCCATACCATT
ATCTCTACCTTCCGATGTATCCACACTACCCCCTCCAATCCTCTATCTCCGGATTTCTCC
AAAGAATCAGATGATATAAGAACACTGCTTCCGAAGGGTTTTGAAGTTATTGGAGCTTTA
ATTGTCGAAAATGACGGAAATTTGGACAAAATCGCCGGGGAGGCGATTAATGCAGCTTGT
AATTTGAAGAAAAGTTTGTCGAGTGATGAAAATTTGGGCAATCTGGAGCTGGTCGGTGCT
GTGGTGGATTTAAATAGCGCTAATGATGTTCGTTTTTTCGTGTCGAAGGATGGAAAATTG
GGCAGTCTTCAGAGTGTTAGTTCCATTATGTACGAAGACAAGCCTGAAAAGTATATTTGG
GAAAGAGGCTGTTTGCTTCGGTGTGCTCTTCATGTAAAATTGCCTCTGTATTATAATACT
AGTAACCCTGATGATGTACATGAGATATATATGCGTGCAGCTGAAGCTGTTGCTAGTAAA
TTCAAAGACCCACAAGTTACTTGCCTAATAGAAGCTTTAGCTGAAACTTCAAGTGGTGCT
ATCGTTCTTCGTGGTTCAGACCTGAACACATATAGTTCAAATTCTTCCTCTGAACTTAAA
GATTCTGATACGAAAGCTTTGTTATGTTCATACTTCTTTTCAATGAGTAAAGATATTACC
TCATTTTCTTCAATAGAGAATGCAGATAAAATCCAAGTAAGCTTTCTGCTTAATAAATCA
ATAAATTCTGCAAAACCTTCTGCACCTATTGCTGAATATTATCCAGCCACCCAGGAAACT
GAACTTCTGGTCATAGGCCATAAACTTGAAGTGCTTTGTTATGCGGCAAAAGATCTATCG
CTGGCTTATAGCGTATCAAAGTTGGTCATCCCTGCACTACTTGACCAGTTACACTCAATG
AGGAAAGTTATCATGCCTGACCTCTTAAAGGGGCATCCGGAGTGGCATCCATATCACTTC
CTTCCTCCAGGACTTTTACATCCGATTACAGTCTTGTATGAACTTAGTTATGGTGAGACA
GAACTGAAGCAAGTTGAAACAAGAAGATCCCTCCATTTGAGACTTGGGTTACCTTTTGAT
CGCCCTCTTCTTAGAATTTCAAATGCTATTGATCTAGTAGGGAAGAAGAATACTGGCAGC
TCAGTCCAGAAAGGCTCTTCTTTGCTTAAGGATGCACATTTGGGGATTCCATGTAGTGGT
GTTTCTGGAGGTGTCTCCTCTCTGGTTCAAGGTTCTTATGAGTACTACCATTACCTCCAT
GAGGGACTTGATGACTCGGGGTGGGGCTGTGCTTACCGCTCTCTGCAGACAATCATTTCT
TGGTTCAAGTTGCAAAATTACACTTCGATTGATGTCCCATCACACAGCTCCCTCTTTTTA
AAACAAGAGACTGCTAGATATAAAAGTAAGCAGACTCCAGTTGCAATAGCTTCAAAAGGG
ATAGCTTAA

Peptide Sequence

PEP ID

XP_016514039.1
PEP Infomation

PREDICTED: probable Ufm1-specific protease isoform X3 [Nicotiana tabacum]
Sequence

MVSETQDPTIRILCRRLQIIKNESGLQWLIGSPFFPRHTIISTFRCIHTTPSNPLSPDFS
KESDDIRTLLPKGFEVIGALIVENDGNLDKIAGEAINAACNLKKSLSSDENLGNLELVGA
VVDLNSANDVRFFVSKDGKLGSLQSVSSIMYEDKPEKYIWERGCLLRCALHVKLPLYYNT
SNPDDVHEIYMRAAEAVASKFKDPQVTCLIEALAETSSGAIVLRGSDLNTYSSNSSSELK
DSDTKALLCSYFFSMSKDITSFSSIENADKIQVSFLLNKSINSAKPSAPIAEYYPATQET
ELLVIGHKLEVLCYAAKDLSLAYSVSKLVIPALLDQLHSMRKVIMPDLLKGHPEWHPYHF
LPPGLLHPITVLYELSYGETELKQVETRRSLHLRLGLPFDRPLLRISNAIDLVGKKNTGS
SVQKGSSLLKDAHLGIPCSGVSGGVSSLVQGSYEYYHYLHEGLDDSGWGCAYRSLQTIIS
WFKLQNYTSIDVPSHSSLFLKQETARYKSKQTPVAIASKGIA

Transcript Sequence

Gene sequence data has not been registered.